Note

For all the result visualizations of SpatialCOC, we provided results in Zenode at: https://zenodo.org/records/15182465. To run the Visualization code below smoothly, please download and store the results and deposit in Results folder.

HLN Augmented Datasets

• Visualization of Original Data Distribution in the Human Lymph Node Dataset
• Plot the Results of the HLN Datasets (Spatial Patterns of Varying Complexity)-Scenario 1
• Metrics of Clustering
• Comparison of Data Distribution Before and After Adding Noise
• Plot the Results of HLN Data (Different Noise Levels)-Combination 1
• Metrics of Clustering

Mouse Brain Datasets

• Visualization of Spatially Continuous Reconstructions
• Plot the Results of the Mouse Brain Dataset
• Metrics
• Marker Genes Calculation and Visualization

Mouse Spleen Datasets

• Histological Validation of Mouse Spleen Structures
• Visualizing Germinal Centers
• Plot the Results of the Mouse Spleen Dataset
• Plot the Vesicular and Smooth Structures of the Mouse Spleen 1
• CHAOS Visualization of the Mouse Spleen Dataset
• Moran Visualization of the Mouse Spleen Dataset

Mouse Thymus Datasets

• Features Visualization
• Plot the Results of the Noised Mouse Spleen Dataset
• Clustering Metrics
• Plot the Results of the Mouse Spleen Dataset
• CHAOS Visualization of the Mouse Spleen Dataset
• Batch Effect Calculation and Visualization of the Mouse Thymus Dataset
• Trajectory Inference for Three Slices of the Mouse Thymus Dataset