.. note::
   For all the result visualizations of SpatialCOC, we provided results in Zenode at: https://zenodo.org/records/15182465. To run the Visualization code below smoothly, please download and store the results and deposit in Results folder.

HLN Augmented Datasets
===================================
.. toctree::
   :maxdepth: 1

   /Reproduction/HLN_Augmented_Datasets/1_Original_Data_Distribution.ipynb
   /Reproduction/HLN_Augmented_Datasets/2_Spatial_Domain_Four_Scenarios.ipynb
   /Reproduction/HLN_Augmented_Datasets/3_Metrics_Four_Scenarios.ipynb
   /Reproduction/HLN_Augmented_Datasets/4_Distribution_of_Data.ipynb
   /Reproduction/HLN_Augmented_Datasets/5_Spatial_Domain_Four_Combinations.ipynb
   /Reproduction/HLN_Augmented_Datasets/6_Metrics_Four_Combinations.ipynb

Mouse Brain Datasets
===================================
.. toctree::
   :maxdepth: 1

   /Reproduction/Mouse_Brain_Datasets/1_INR.ipynb
   /Reproduction/Mouse_Brain_Datasets/2_Spatial_Domain.ipynb
   /Reproduction/Mouse_Brain_Datasets/3_Moran.ipynb
   /Reproduction/Mouse_Brain_Datasets/4_Marker_Gene.ipynb

Mouse Spleen Datasets
===================================
.. toctree::
   :maxdepth: 1

   /Reproduction/Mouse_Spleen_Datasets/1_Histological_Validation.ipynb
   /Reproduction/Mouse_Spleen_Datasets/2_Spatial_Domain.ipynb
   /Reproduction/Mouse_Spleen_Datasets/3_Vesicular_Smooth_Structures.ipynb
   /Reproduction/Mouse_Spleen_Datasets/4_CHAOS.ipynb
   /Reproduction/Mouse_Spleen_Datasets/5_Moran.ipynb

Mouse Thymus Datasets
===================================
.. toctree::
   :maxdepth: 1

   /Reproduction/Mouse_Thymus_Datasets/1_Extracted_Features.ipynb
   /Reproduction/Mouse_Thymus_Datasets/2_Spatial_Domain_Noised.ipynb
   /Reproduction/Mouse_Thymus_Datasets/3_Metrics.ipynb
   /Reproduction/Mouse_Thymus_Datasets/4_Spatial_Domain.ipynb
   /Reproduction/Mouse_Thymus_Datasets/5_CHAOS.ipynb
   /Reproduction/Mouse_Thymus_Datasets/6_Batch_Effect_Calculation.ipynb
   /Reproduction/Mouse_Thymus_Datasets/7_Trajectory_Inference.ipynb