SpatialCOC
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Preparation

  • Preparation of SpatialCOC
  • Data Preparation for SpatialCOC

Tutorials

  • Tutorial 1: Simulated Data (Spatial Patterns of Varying Complexity)
  • Tutorial 2: Simulated Data (Different Noise Levels and Combinations)
  • Tutorial 3: Mouse Brain Dataset
  • Tutorial 4: Mouse Spleen Dataset
  • Tutorial 5: Mouse Thymus Dataset

Reproduction

  • HLN Augmented Datasets
  • Mouse Brain Datasets
  • Mouse Spleen Datasets
  • Mouse Thymus Datasets
SpatialCOC
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  • Tutorial 1: Simulated Data (Spatial Patterns of Varying Complexity)
    • Loading package
    • Loading data
    • Training the model
    • Storing the results
    • Visualizing results
  • Tutorial 2: Simulated Data (Different Noise Levels and Combinations)
    • Loading package
    • Loading data
    • Training the model
    • Storing the results
    • Visualizing results
  • Tutorial 3: Mouse Brain Dataset
    • Loading package
    • Loading and preprocessing data
    • Training the model
    • Visualization and Analysis
  • Tutorial 4: Mouse Spleen Dataset
    • Loading package
    • Loading data and preprocessing
    • Training the model
    • Visualization
    • Identifying the marker genes
    • Histological Validation of Mouse Spleen Structures
  • Tutorial 5: Mouse Thymus Dataset
    • Loading package
    • Loading and preprocessing data
    • Training the model
    • Visualizing and Analysing
    • Identifying the marker genes
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