SpatialCOC
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Preparation
Preparation of SpatialCOC
Data Preparation for SpatialCOC
Tutorials
Tutorial 1: Simulated Data (Spatial Patterns of Varying Complexity)
Tutorial 2: Simulated Data (Different Noise Levels and Combinations)
Tutorial 3: Mouse Brain Dataset
Tutorial 4: Mouse Spleen Dataset
Tutorial 5: Mouse Thymus Dataset
Reproduction
HLN Augmented Datasets
Mouse Brain Datasets
Mouse Spleen Datasets
Mouse Thymus Datasets
SpatialCOC
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Tutorial 1: Simulated Data (Spatial Patterns of Varying Complexity)
Loading package
Loading data
Training the model
Storing the results
Visualizing results
Tutorial 2: Simulated Data (Different Noise Levels and Combinations)
Loading package
Loading data
Training the model
Storing the results
Visualizing results
Tutorial 3: Mouse Brain Dataset
Loading package
Loading and preprocessing data
Training the model
Visualization and Analysis
Tutorial 4: Mouse Spleen Dataset
Loading package
Loading data and preprocessing
Training the model
Visualization
Identifying the marker genes
Histological Validation of Mouse Spleen Structures
Tutorial 5: Mouse Thymus Dataset
Loading package
Loading and preprocessing data
Training the model
Visualizing and Analysing
Identifying the marker genes